species:   Scscl
pid:       PID1647
parent:    Ssc-milR-123
paralog:   
locus:     NW_001820826.1:1280326-1280411
matures:   ['UCGAGGGUCAUUCGGGUUCGG', 'GUACAAAAGUAGCUUCGGGC']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820826.1:1280326-1280411

19 out of bounds
13 alignments
2 proper strand
1 stranded perfect matches

         **********************                         *********************         
CUUCAAACGCUCGAGGGUCAUUCGGGUUCGGUUUGGUCAGUUGCCUUCUCACCAGAUGGUACAAAAGUAGCUUCGGGCUCUUACGA
........((((((((.(.(((...((.(.(((((((.((.......)).))))))).).))...)))).))))))))........
----------UCGAGGGUCAUUCGGGUUCGG------------------------------------------------------- l=21 a=0 c
----------------------------------------------------------GUACAAAAGUAGCUUCGGGC-------- l=20 a=0 c*
-----------CGAGGGUCAUUCGGGUUCGG------------------------------------------------------- l=20 a=1 ma
----------------------------------------------------------GUACAAAAGUAGCUUCGGG--------- l=19 a=0 ma*

-----------CGAGGGUCAUUCGGGUUCGG------------------------------------------------------- l=20 a=1 (ma)
--------------------------------------------------------UGGUACAAAAGUcGCUUCGGGC-------- l=22 a=1 

mb-01111
ax-1001011
ku-01
ss-110111001100
fn-101
